Informatics Operations Software Engineer - 33532 University Staff

Description

University of Colorado Anschutz Medical Campus

Colorado Center for Personalized Medicine

Job Title: Informatics Operations Software Engineer

Position #: 00821745 – Requisition #: 33532

Job Summary:

Key Responsibilities:

• Build, maintain, and support reliable software to support informatics pipelines that process raw genetic data.

• Help ensure pipelines accurately and reliably process genetic data for delivery into patients' records for clinical care.

• Create and maintain documentation to support informatics pipelines and meet project management delivery schedules.

• Follow software development best practices, including version control, automated linting, software packaging, and automated testing, and provide subject matter expertise to the team in these areas.

Work Location:

Why Join Us:

Position #: 00821745 – Requisition #: 33532

Job Summary:

Key Responsibilities:

• Build, maintain, and support reliable software to support informatics pipelines that process raw genetic data.

• Help ensure pipelines accurately and reliably process genetic data for delivery into patients' records for clinical care.

• Create and maintain documentation to support informatics pipelines and meet project management delivery schedules.

• Follow software development best practices, including version control, automated linting, software packaging, and automated testing, and provide subject matter expertise to the team in these areas.

Work Location:

Why Join Us:

00821745 – Requisition #: 33532

Job Summary:

Key Responsibilities:

• Build, maintain, and support reliable software to support informatics pipelines that process raw genetic data.

• Help ensure pipelines accurately and reliably process genetic data for delivery into patients' records for clinical care.

• Create and maintain documentation to support informatics pipelines and meet project management delivery schedules.

• Follow software development best practices, including version control, automated linting, software packaging, and automated testing, and provide subject matter expertise to the team in these areas.

Work Location:

Why Join Us:

Diversity and Equity:

Qualifications:

Minimum Qualifications:

• Bachelor's degree in computer science, software engineering, information technology, bioinformatics, or related disciplines. Additional related experience may substitute for education.

• 3+ years of related software experience.*

• 2+ years of experience with Python.*

• 2+ years of experience working with Unix and/or Linux, including shell scripting.*

• 1+ years of experience with one or more relational database systems (MySQL, PostgreSQL, Oracle, SQLite, etc).*

• *Years of experience may be obtained simultaneously.

Applicants must meet minimum qualifications at the time of hire.

Preferred Qualifications:

• Familiar with containerized computing solutions such as Docker/containerd, Singularity, etc.

• Documented open-source contributions.

• 1+ years of experience with Ansible, Terraform, or other infrastructure as code solutions.

• 2+ years experience with one or more Python web frameworks (FastAPI, Flask, Django, etc.)

• 1+ year experience developing and deploying containerized workflows (ETL, bioinformatics, etc)

• 2+ years experience with cloud-based computing solutions (AWS, Google Cloud Platform, etc.).

• 2+ years experience using data engineering and data orchestration tools (WDL, Nextflow, Airflow, Dagster, Prefect, etc.).

• 2+ years experience with R.

• Demonstrated knowledge of scientific principles and concepts in GWAS analysis and NGS analysis.

• Familiarity with DNANexus or other platform as a service (PaaS) offerings in the -omics space.

Knowledge, Skills, and Abilities:

• Ability to communicate effectively, both in writing and orally.

• Ability to establish and maintain effective working relationships with employees at all levels throughout the institution.

• Demonstrated commitment to advance diversity and inclusion.

• Ability to interact with people of varying technical levels to gather requirements and understand existing systems relevant to the challenges at hand.

• Ability to interact effectively and respectfully with a team of developers with complementary competencies.

How to Apply:

• 1+ year experience developing and deploying containerized workflows (ETL, bioinformatics, etc)

• 2+ years experience with cloud-based computing solutions (AWS, Google Cloud Platform, etc.).

• 2+ years experience using data engineering and data orchestration tools (WDL, Nextflow, Airflow, Dagster, Prefect, etc.).

• 2+ years experience with R.

• Demonstrated knowledge of scientific principles and concepts in GWAS analysis and NGS analysis.

• Familiarity with DNANexus or other platform as a service (PaaS) offerings in the -omics space.

Knowledge, Skills, and Abilities:

• Ability to communicate effectively, both in writing and orally.

• Ability to establish and maintain effective working relationships with employees at all levels throughout the institution.

• Demonstrated commitment to advance diversity and inclusion.

• Ability to interact with people of varying technical levels to gather requirements and understand existing systems relevant to the challenges at hand.

• Ability to interact effectively and respectfully with a team of developers with complementary competencies.

How to Apply:

• 2+ years experience with cloud-based computing solutions (AWS, Google Cloud Platform, etc.).

• 2+ years experience using data engineering and data orchestration tools (WDL, Nextflow, Airflow, Dagster, Prefect, etc.).

• 2+ years experience with R.

• Demonstrated knowledge of scientific principles and concepts in GWAS analysis and NGS analysis.

• Familiarity with DNANexus or other platform as a service (PaaS) offerings in the -omics space.

Knowledge, Skills, and Abilities:

• Ability to communicate effectively, both in writing and orally.

• Ability to establish and maintain effective working relationships with employees at all levels throughout the institution.

• Demonstrated commitment to advance diversity and inclusion.

• Ability to interact with people of varying technical levels to gather requirements and understand existing systems relevant to the challenges at hand.

• Ability to interact effectively and respectfully with a team of developers with complementary competencies.

How to Apply:

Screening of Applications Begins:

Anticipated Pay Range:

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ADA Statement:

Background Check Statement:

Vaccination Statement:

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Join our dynamic team at the Colorado Center for Personalized Medicine (CCPM) at the University of Colorado Anschutz Medical Campus, where we are at the forefront of integrating genetic information to enhance patient care. CCPM is committed to leveraging the unique combination of genetic information derived from its CAP/CLIA biobank lab, and comprehensive electronic health records to improve healthcare outcomes. Under the direction and guidance of the Director of Informatics Operations (IO), the Informatics Operations Software Engineer will be expected to craft and maintain innovative software solutions that seamlessly integrate genetic data with diverse health records. Our work in this space spans from producing robust, well-documented informatics pipelines to web-based interfaces used to support operations. The software you develop will be key in providing critical genetic insights to both patients and healthcare providers, significantly contributing to our clinical impact. We welcome applicants passionate about collaborating with a multidisciplinary team, encompassing bioinformaticians, clinicians, and health IT experts. As an Informatics Operations Software Engineer, you will be expected to develop and maintain accessible and robust clinical and research pipelines. Your expertise in software development practices will be invaluable in guiding our team towards excellence.

Hybrid – this role is eligible for a hybrid schedule of 3 days per week on campus and as needed for in-person meetings.

The Colorado Center for Personalized Medicine (CCPM) at the University of Colorado Anschutz Medical Campus advances the use of genetic information to guide care. CCPM contributes to clinical operations by returning structured genetic information, derived from its CAP/CLIA biobank lab, to the electronic health record and advances research by applying statistical methods to genetic data from the CCPM biobank and electronic health records (EHR) data from Health Data Compass to generate high-quality data and results freezes that enable researchers to discover how genetic variants contribute to human well-being and disease. The University of Colorado offers a comprehensive benefits package that includes health insurance, life insurance, retirement plans, tuition benefits, ECO pass, paid time off – vacation, sick, holidays, and more. To see what benefits are available, please visit: https://apptrkr.com/get_redirect.php?id=5239582&targetURL=Informatics Operations Software Engineer

Join our dynamic team at the Colorado Center for Personalized Medicine (CCPM) at the University of Colorado Anschutz Medical Campus, where we are at the forefront of integrating genetic information to enhance patient care. CCPM is committed to leveraging the unique combination of genetic information derived from its CAP/CLIA biobank lab, and comprehensive electronic health records to improve healthcare outcomes. Under the direction and guidance of the Director of Informatics Operations (IO), the Informatics Operations Software Engineer will be expected to craft and maintain innovative software solutions that seamlessly integrate genetic data with diverse health records. Our work in this space spans from producing robust, well-documented informatics pipelines to web-based interfaces used to support operations. The software you develop will be key in providing critical genetic insights to both patients and healthcare providers, significantly contributing to our clinical impact. We welcome applicants passionate about collaborating with a multidisciplinary team, encompassing bioinformaticians, clinicians, and health IT experts. As an Informatics Operations Software Engineer, you will be expected to develop and maintain accessible and robust clinical and research pipelines. Your expertise in software development practices will be invaluable in guiding our team towards excellence.

Hybrid – this role is eligible for a hybrid schedule of 3 days per week on campus and as needed for in-person meetings.

The Colorado Center for Personalized Medicine (CCPM) at the University of Colorado Anschutz Medical Campus advances the use of genetic information to guide care. CCPM contributes to clinical operations by returning structured genetic information, derived from its CAP/CLIA biobank lab, to the electronic health record and advances research by applying statistical methods to genetic data from the CCPM biobank and electronic health records (EHR) data from Health Data Compass to generate high-quality data and results freezes that enable researchers to discover how genetic variants contribute to human well-being and disease. The University of Colorado offers a comprehensive benefits package that includes health insurance, life insurance, retirement plans, tuition benefits, ECO pass, paid time off – vacation, sick, holidays, and more. To see what benefits are available, please visit: https://apptrkr.com/get_redirect.php?id=5239582&targetURL=

Join our dynamic team at the Colorado Center for Personalized Medicine (CCPM) at the University of Colorado Anschutz Medical Campus, where we are at the forefront of integrating genetic information to enhance patient care. CCPM is committed to leveraging the unique combination of genetic information derived from its CAP/CLIA biobank lab, and comprehensive electronic health records to improve healthcare outcomes. Under the direction and guidance of the Director of Informatics Operations (IO), the Informatics Operations Software Engineer will be expected to craft and maintain innovative software solutions that seamlessly integrate genetic data with diverse health records. Our work in this space spans from producing robust, well-documented informatics pipelines to web-based interfaces used to support operations. The software you develop will be key in providing critical genetic insights to both patients and healthcare providers, significantly contributing to our clinical impact. We welcome applicants passionate about collaborating with a multidisciplinary team, encompassing bioinformaticians, clinicians, and health IT experts. As an Informatics Operations Software Engineer, you will be expected to develop and maintain accessible and robust clinical and research pipelines. Your expertise in software development practices will be invaluable in guiding our team towards excellence.

Hybrid – this role is eligible for a hybrid schedule of 3 days per week on campus and as needed for in-person meetings.

The Colorado Center for Personalized Medicine (CCPM) at the University of Colorado Anschutz Medical Campus advances the use of genetic information to guide care. CCPM contributes to clinical operations by returning structured genetic information, derived from its CAP/CLIA biobank lab, to the electronic health record and advances research by applying statistical methods to genetic data from the CCPM biobank and electronic health records (EHR) data from Health Data Compass to generate high-quality data and results freezes that enable researchers to discover how genetic variants contribute to human well-being and disease. The University of Colorado offers a comprehensive benefits package that includes health insurance, life insurance, retirement plans, tuition benefits, ECO pass, paid time off – vacation, sick, holidays, and more. To see what benefits are available, please visit: https://www.cu.edu/employee-services/benefits-wellness (https://apptrkr.com/get_redirect.php?id=5239582&targetURL=https://www.cu.edu/employee-services/benefits-wellness) .

The University of Colorado Anschutz Medical Campus is committed to recruiting and supporting a diverse student body, faculty, and administrative staff. The university strives to promote a culture of inclusiveness, respect, communication and understanding. We encourage applications from women, ethnic minorities, persons with disabilities, persons within the LGBTQ+ community, and all veterans. The University of Colorado is committed to diversity and equality in education and employment.

For full consideration, please submit the following document(s): 1. A letter of interest describing relevant job experiences as they relate to listed job qualifications and interest in the position 2. Curriculum vitae / Resume 3. Three to five professional references, including name, address, phone number (mobile number if appropriate), and email address Questions should be directed to: Latrina Gilmore, https://apptrkr.com/get_redirect.php?id=5239582&targetURL=

For full consideration, please submit the following document(s): 1. A letter of interest describing relevant job experiences as they relate to listed job qualifications and interest in the position 2. Curriculum vitae / Resume 3. Three to five professional references, including name, address, phone number (mobile number if appropriate), and email address Questions should be directed to: Latrina Gilmore, https://apptrkr.com/get_redirect.php?id=5239582&targetURL=

For full consideration, please submit the following document(s): 1. A letter of interest describing relevant job experiences as they relate to listed job qualifications and interest in the position 2. Curriculum vitae / Resume 3. Three to five professional references, including name, address, phone number (mobile number if appropriate), and email address Questions should be directed to: Latrina Gilmore, latrina.gilmore@cuanschutz.edu (https://apptrkr.com/get_redirect.php?id=5239582&targetURL=latrina.gilmore@cuanschutz.edu)

Immediately and continues until the position is filled.

The starting salary range () for this position has been established as $81,869 to $104,138. The above salary range () represents the University's good faith and reasonable estimate of the range of possible compensation at the time of posting. This position may be eligible for overtime compensation, depending on the level. Your total compensation goes beyond the number on your paycheck. The University of Colorado provides generous leave, health plans, and retirement contributions that add to your bottom line. Total Compensation Calculator: http://www.cu.edu/node/153125 (https://apptrkr.com/get_redirect.php?id=5239582&targetURL=http://www.cu.edu/node/153125)

The University will provide reasonable accommodations to applicants with disabilities throughout the employment application process. To request an accommodation pursuant to the Americans with Disabilities Act, please contact the Human Resources ADA Coordinator at hr.adacoordinator@cuanschutz.edu (https://apptrkr.com/get_redirect.php?id=5239582&targetURL=hr.adacoordinator@cuanschutz.edu) ​.

The University of Colorado Anschutz Medical Campus is dedicated to ensuring a safe and secure environment for our faculty, staff, students, and visitors. To assist in achieving that goal, we conduct background investigations for all prospective employees.

CU Anschutz strongly encourages vaccination against the COVID-19 virus and other vaccine preventable diseases (https://apptrkr.com/get_redirect.php?id=5239582&targetURL=https://www.cdc.gov/vaccines/schedules/downloads/adult/adult-combined-schedule.pdf) . If you work, visit, or volunteer in healthcare facilities or clinics operated by our affiliated hospital or clinical partners or by CU Anschutz, you will be required to comply with the vaccination and medical surveillance policies of the facilities or clinics where you work, visit, or volunteer, respectively. In addition, if you work in certain research areas or perform certain safety sensitive job duties, you must enroll in the occupational health medical surveillance program (https://apptrkr.com/get_redirect.php?id=5239582&targetURL=https://research.cuanschutz.edu/ehs/home/divisions/occupational-health/oh-enrollment) .

Application Materials Required: Cover Letter, Resume/CV, List of References : Information Technology : Hybrid Department: U0001 -- Anschutz Med Campus or Denver - 21662 - ADM VCHA-CCPM TICR GENOPS : Full-time : May 6, 2024 : Ongoing Posting Contact Name: Latrina Gilmore Posting Contact Email: latrina.gilmore@cuanschutz.edu (https://apptrkr.com/get_redirect.php?id=5239582&targetURL=latrina.gilmore@cuanschutz.edu) Position Number: 00821745jeid-641eeb7cde6cea4e8db3b7721fdd8be8

The University of Colorado does not discriminate on the basis of race, color, national origin, sex, age, pregnancy, disability, creed, religion, sexual orientation, gender identity, gender expression, veteran status, political affiliation, or political philosophy. All qualified individuals are encouraged to apply.